Transcript 18014 | MetamORF

Transcript

ID CARD

MetamORF ID

18014

ENSMUST00000129777

Name

Top2a-202

Strand

Biotype

processed_transcript

Start-end positions

99022085-99024178

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:21973

Aliases

ENSMUSG00000020914,
MGI:98790, NCBI:21973, OFF:Top2a,
Top-2, Top2a

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
24254	159	CTG ...	LEH ...	Ribo-seq	CTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1287131	111	ATT ...	ILE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
640966	102	ATG ...	MAR ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, R1E
1293953	204	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
652582	63	CTG ...	LLR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, Neutrophil, R1E
1295690	219	AAG ...	KNE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
651832	75	ATG ...	MKM ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, R1E
419284	45	ATA ...	IYC ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	ncRNA sORF	C2C12, E14
1286543	48	AAG ...	KSL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
643698	69	ATG ...	MLA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, R1E
419051	108	ATG ...	MKM ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, C2C12, MEF, R1E
22447	195	TTG ...	LSI ...	Ribo-seq	TTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
19059	111	TTG ...	LSI ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, MEF, R1E, Testis
1292776	60	AGG ...	REV ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
644108	66	TTG ...	LAL ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, MEF, R1E
23717	147	CTG ...	LLR ...	Ribo-seq	CTG		14	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
1288606	135	AAG ...	KNE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
643192	39	TTG ...	LFL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, R1E
645774	33	CTG ...	LVC ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, R1E
644439	81	TTG ...	LKE ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, R1E
1286532	120	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
994783	36	TTG ...	LYK ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
90815	75	CTG ...	LEH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, R1E, Testis
18013	42	TTG ...	LSP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	C2C12, Testis
1284010	69	ATT ...	INY ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
22828	117	GTG ...	VEL ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis

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