Transcript 424675

Transcript

ID CARD

MetamORF ID

424675

ENSMUST00000129761

Name

Capns1-204

Strand

Biotype

processed_transcript

Start-end positions

30187483-30193781

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:12336

Aliases

Capa-4,
Capa4, Capn4, Capns1,
Cdps, Css1, D7Ertd146e,
ENSMUSG00000001794, MGI:88266, NCBI:12336,
OFF:Capns1

Chr 7

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
225852	33	CTG ...	LLG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1818161	144	CTG ...	LGH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
219095	69	CTG ...	LGF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1813980	117	ATG ...	MVS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
214600	72	CTG ...	LPS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, R1E
424674	42	GTG ...	VNI ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1259619	120	ATC ...	ISC ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1473826	36	TTG ...	LLE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
4479	54	GTG ...	VKK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, R1E
4511	69	TTG ...	LRP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, R1E
1818205	147	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1259022	48	ATC ...	IQV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
4418	96	CTG ...	LKT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
916490	243	ATC ...	IGS ...	Ribo-seq	ATC		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
218238	54	ATG ...	MRA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
426568	195	CTG ...	LNE ...	Ribo-seq	CTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
216713	33	TTG ...	LTK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
916261	105	AGG ...	RLD ...	Ribo-seq	AGG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
211020	30	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, R1E
213131	135	TTG ...	LFL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
229283	33	CTG ...	LLR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, R1E
1816816	153	TTG ...	LTV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
987850	90	TTG ...	LNC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Liver, R1E
916058	36	ATC ...	IQE ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
425937	111	TTG ...	LVR ...	Ribo-seq	TTG		18	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1259377	168	ATC ...	IRR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14

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