Transcript 56346 | MetamORF

Transcript

ID CARD

MetamORF ID

56346

ENSMUST00000129748

Name

Plaa-203

Strand

Biotype

processed_transcript

Start-end positions

94567514-94576388

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:18786

Aliases

2410007N06,
AI536418, AU018445, AW208417,
D4Ertd618e, ENSMUSG00000028577, MGI:104810,
NCBI:18786, OFF:Plaa, PLA2P,
Plaa, PLAP, Ufd3

Chr 4

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
56689	150	GTG ...	VAL ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Testis
553974	45	CTG ...	LGV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
58059	192	TTG ...	LEV ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, Liver, MEF, Testis
150089	30	TTG ...	LLV ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, NSC
56345	36	TTG ...	LWK ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Testis
1656236	36	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
148342	39	GTG ...	VSE ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF
897292	132	AAG ...	KLT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
550444	57	TTG ...	LLL ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF, NSC
1652893	30	TTG ...	LVS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
57311	270	TTG ...	LNY ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, Testis
554042	30	ATG ...	MSP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, E14
548744	48	GTG ...	VLG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
547595	45	CTG ...	LHL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
1227057	33	AGG ...	RKA ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
544979	60	ATG ...	MRI ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, MEF
552971	30	TTG ...	LKG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, E14
56683	183	GTG ...	VQD ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Testis
1226409	36	ATA ...	ITL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
545301	45	ATG ...	MKK ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF
1225272	132	ATC ...	ISD ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
57802	87	CTG ...	LIC ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Testis
58434	285	CTG ...	LAT ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Testis
58368	168	CTG ...	LKE ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Liver, MEF, Neutrophil, Testis
549646	57	CTG ...	LFV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
546834	39	TTG ...	LTF ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, E14, MEF
897979	69	AAG ...	KPR ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
510638	51	TTG ...	LWL ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF
546656	54	TTG ...	LSF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
553925	33	GTG ...	VPT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
1225098	78	AGG ...	RRP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1228009	33	ATT ...	IDL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1231428	45	ATA ...	IKT ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
544671	42	TTG ...	LGH ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF
550148	30	TTG ...	LTK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
1231547	60	ATT ...	ILF ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
896699	153	GTG ...	VNA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1231153	72	AGG ...	RTK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
57103	93	CTG ...	LSL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Testis
1227028	165	ACG ...	TFR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
59044	276	TTG ...	LTL ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Testis
149981	30	ATG ...	MEL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
545236	69	TTG ...	LHC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3

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