Transcript 275280

Transcript

ID CARD

MetamORF ID

275280

ENSMUST00000129612

Name

L1cam-205

Strand

Biotype

retained_intron

Start-end positions

73863713-73880795

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:16728

Aliases

CD171,
ENSMUSG00000031391, L1, L1cam,
MGI:96721, N-CAM-L1, NCAM-L1,
NCBI:16728, OFF:L1cam

Chr X

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
282995	54	CTG ...	LQC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
275612	141	TTG ...	LIK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
283465	216	GTG ...	VVH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
283741	186	TTG ...	LHI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
275477	78	GTG ...	VML ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
282363	39	CTG ...	LKC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
282717	162	GTG ...	VSM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
281503	63	GTG ...	VSG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
275279	99	ATG ...	MRH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
277826	63	GTG ...	VWP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
283948	225	TTG ...	LGV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
283152	39	CTG ...	LHR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
277188	195	ATG ...	MSG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
276771	126	ATG ...	MPV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
281279	132	ATG ...	MRM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
279831	69	CTG ...	LVV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
283347	72	CTG ...	LRY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
281573	30	CTG ...	LAS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
282423	33	CTG ...	LLI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
283500	57	CTG ...	LSS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
283036	213	GTG ...	VHE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
277340	171	ATG ...	MET ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
277513	42	GTG ...	VLH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
284462	123	GTG ...	VLT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
280992	48	GTG ...	VAG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain

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