Transcript 30649 | MetamORF

Transcript

ID CARD

MetamORF ID

30649

ENSMUST00000129589

Name

Azin1-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

38488241-38519169

CDS Start-stop positions

38497535-38501505

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:54375

Aliases

1700085L02Rik,
AZI, Azin1, ENSMUSG00000037458,
MGI:1859169, NCBI:54375, Oazi,
Oazin, OFF:Azin1

Chr 15

ORFs

86 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
31525	42	CTG ...	LVY ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain, Testis
32372	153	TTG ...	LGV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Testis
362792	42	ATG ...	MPC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
1538790	99	ATG ...	MWE ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
359569	93	TTG ...	LTM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
31004	54	ATG ...	MAQ ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative NMD sORF Upstream	Brain, E14, Glioma, Liver, MEF, MESC
472273	57	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
32616	126	GTG ...	VAQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, Testis
359559	87	ATG ...	MSL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream NMD sORF	Brain, Glioma, Liver, MEF, MESC
359258	69	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
31745	66	TTG ...	LVA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain, Testis
31976	99	CTG ...	LVS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC, E14, Liver
31558	129	GTG ...	VVA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, Testis
30736	123	CTG ...	LNV ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Brain, Liver, Testis
949182	210	ATT ...	ISP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF Upstream	E14
31388	99	GTG ...	VKC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, Testis
360909	72	TTG ...	LAC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
421517	102	AAG ...	KDL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
358454	87	ATG ...	MRT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14
31604	63	GTG ...	VAR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain, Testis
31328	105	GTG ...	VSQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Testis
360303	48	ATG ...	MYM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
359581	33	CTG ...	LML ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
356112	45	TTG ...	LEM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
31199	180	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF Upstream	E14
365167	99	ATG ...	MFQ ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
31600	63	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Testis
949193	270	ACG ...	TRL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	NMD sORF Upstream	E14
354773	48	GTG ...	VMS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
1181664	51	AAG ...	KLL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	E14
32485	117	GTG ...	VGD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Downstream NMD sORF	BMDC, Brain, Liver, Testis
358721	72	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
359704	69	CTG ...	LKN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
31287	96	GTG ...	VSV ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC, Liver, Testis
354736	39	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
31369	264	CTG ...	LNP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF Upstream	E14
359172	75	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
30903	198	CTG ...	LFT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Downstream NMD sORF	Brain, Liver, Testis
31585	51	TTG ...	LFF ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain, Testis
421290	168	CTG ...	LSH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
11420	54	CTG ...	LYR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain, Liver
949595	72	ACG ...	TSS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
1001771	39	ATG ...	MRC ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
359503	72	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
948000	39	ATA ...	IQL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	E14
363830	150	TTG ...	LDI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver
358514	30	TTG ...	LLH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	Brain
949777	171	ATC ...	ILS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
1182973	75	ATA ...	ITW ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
948245	51	ACG ...	TLY ...	Ribo-seq	ACG		1	sORFs_org_Mouse	NMD sORF Upstream	E14
357971	72	GTG ...	VAD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
31993	90	GTG ...	VPR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC, E14, Liver, Testis
31172	75	GTG ...	VLE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Testis
30648	177	GTG ...	VGD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, Testis
363697	36	CTG ...	LSQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver
1180168	120	AGG ...	RPP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF Upstream	E14
30872	147	GTG ...	VES ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream NMD sORF	Brain, Liver, Testis
363665	33	TTG ...	LIT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
31365	102	CTG ...	LLK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF Upstream	Brain, E14
421511	192	ATA ...	IES ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
354657	60	ATG ...	MKE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
359819	30	ATG ...	MTF ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse Johnstone2016	NMD sORF Upstream	Brain, E14, Glioma, Liver, MEF, MESC
681668	48	ATG ...	MMV ...	Ribo-seq	ATG	weak	1	Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
30722	33	CTG ...	LTE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain, E14
357910	45	ATG ...	MKD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
359592	81	ATG ...	MFQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
32362	156	GTG ...	VKK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, Testis
31418	42	GTG ...	VEA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
948668	72	ATA ...	IGL ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	E14
11349	57	GTG ...	VLY ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain, E14, Liver, Testis
360370	48	TTG ...	LEC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver
358712	90	CTG ...	LLD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
30581	195	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF Upstream	E14
358300	153	CTG ...	LLD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver
362794	45	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
362623	87	TTG ...	LDE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
357213	87	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
365146	84	ATG ...	MRT ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
1181932	36	ATA ...	IFT ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
362316	39	TTG ...	LIK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
1183606	57	AGG ...	RHL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
788417	36	ATG ...	MVL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	E14
32190	162	GTG ...	VQE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Testis
31946	39	TTG ...	LGI ...	Ribo-seq	TTG	optimal	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14, Testis
355055	90	TTG ...	LVS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	Brain
356150	30	ATG ...	MLD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain

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