Transcript 974728

Transcript

ID CARD

MetamORF ID

974728

ENSMUST00000129380

Name

Eef1a1-203

Strand

Biotype

retained_intron

Start-end positions

78478684-78479716

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:13627

Aliases

Eef1a1,
ENSMUSG00000037742, MGI:1096881, NCBI:13627,
OFF:Eef1a1

Chr 9

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6326	75	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
417495	36	ACG ...	TLL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
6137	48	GTG ...	VFS ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF
86996	45	GTG ...	VLA ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF
85049	33	CTG ...	LTT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, R1E
1272279	114	CTG ...	LKS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
6314	51	CTG ...	LVF ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
6668	36	CTG ...	LVR ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E
921878	237	ATC ...	ISA ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
1270258	120	AAG ...	KFL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1269723	135	CTG ...	LED ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1272909	213	CTG ...	LDC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
6437	69	CTG ...	LWA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
83399	42	CTG ...	LAT ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain

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