Transcript 576 | MetamORF

Transcript

ID CARD

MetamORF ID

576

ENSMUST00000129342

Name

Khdrbs1-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

129703164-129742297

CDS Start-stop positions

129716089-129742160

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:20218

Aliases

ENSMUSG00000028790,
Khdrbs1, MGI:893579, NCBI:20218,
OFF:Khdrbs1, p62, p68,
Sam68

Chr 4

ORFs

77 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1107	42	TTG ...	LDH ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, Liver, Skin_tumor, Spleen_B_cell, Testis
821	99	TTG ...	LSY ...	Ribo-seq	TTG		13	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, E14, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
59448	90	GTG ...	VLQ ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Spleen_B_cell, Testis
58612	138	CTG ...	LTV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, Spleen_B_cell, Testis
57438	72	CTG ...	LIP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Testis
59472	84	ATG ...	MSS ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, MEF, R1E, Spleen_B_cell, Testis
1224763	207	AGG ...	RLH ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
900032	117	ATC ...	IHM ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	BMDC
57775	288	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Testis
1076	48	GTG ...	VVL ...	Ribo-seq	GTG	strong	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Skin_tumor, Spleen_B_cell, Testis
740	90	TTG ...	LNG ...	Ribo-seq	TTG		12	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, E14, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
510447	252	CTG ...	LLQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain
1230287	156	ATC ...	ITR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1225377	105	AGG ...	RGA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
59270	63	CTG ...	LGF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, E14, Spleen_B_cell, Testis
56109	291	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Testis
150161	30	ATG ...	MLW ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, R1E
158463	45	ATG ...	MLL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, E14, R1E, Spleen_B_cell
701	126	GTG ...	VPP ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Skin_tumor, Spleen_B_cell, Testis
977211	111	ATT ...	IEV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
896468	60	ACG ...	TRA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
56296	123	CTG ...	LHV ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, Liver, R1E, Spleen_B_cell, Testis
513006	195	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain
1228484	84	AAG ...	KTP ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
55722	168	CTG ...	LVP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, MEF, Testis
58665	78	CTG ...	LPR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, Testis
511324	186	CTG ...	LFF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain
1227060	69	ATT ...	IQR ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1225925	72	AAG ...	KSL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1057	81	TTG ...	LDH ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, Liver, MEF, Skin_tumor, Spleen_B_cell, Testis
1226753	51	AAG ...	KLM ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
56539	96	TTG ...	LWG ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, Spleen_B_cell, Testis
55834	75	GTG ...	VLI ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Testis
59367	147	CTG ...	LPP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	BMDC, Brain, Testis
897738	237	AGG ...	RSF ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
155296	30	CTG ...	LHQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14
150862	54	GTG ...	VKL ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, R1E, Spleen_B_cell
59470	66	TTG ...	LDP ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, R1E, Spleen_B_cell, Testis
59365	48	GTG ...	VRG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver, Spleen_B_cell, Testis
882	54	TTG ...	LPP ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Skin_tumor, Spleen_B_cell, Testis
55782	33	CTG ...	LNP ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, E14, MEF, R1E, Spleen_B_cell, Testis, v6-5
58420	168	TTG ...	LRK ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, E14, Liver, R1E, Spleen_B_cell, Testis
575	108	GTG ...	VRG ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, Liver, MEF, Skin_tumor, Spleen_B_cell, Testis
899345	63	AGG ...	RES ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
57702	87	CTG ...	LKE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Testis
858	186	TTG ...	LVR ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Skin_tumor, Spleen_B_cell, Testis
59167	87	TTG ...	LYF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, Testis
1229069	60	ATA ...	IPL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
58167	180	GTG ...	VGK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Testis
1225454	39	ATA ...	ICP ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
899168	84	ACG ...	TIL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
899328	81	ATA ...	IST ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
160273	48	CTG ...	LSG ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, v6-5
758	168	GTG ...	VRG ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, Liver, MEF, Skin_tumor, Spleen_B_cell, Testis
1230591	42	ACG ...	TEY ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1224871	39	AAG ...	KGA ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	CDS NMD sORF	E14
1169	45	GTG ...	VLD ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Skin_tumor, Spleen_B_cell, Testis
1684444	30	TTG ...	LYF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
59474	42	GTG ...	VKG ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	CDS NMD sORF	BMDC, Liver, R1E, Spleen_B_cell, Testis
1376861	42	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
58583	117	TTG ...	LDL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, MEF, Testis
157669	69	CTG ...	LNS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, MEF
1229928	174	AAG ...	KIL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
56898	78	TTG ...	LRR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, Testis
1230678	45	AGG ...	RKS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
57499	75	TTG ...	LKS ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, R1E, Spleen_B_cell, Testis
57464	237	GTG ...	VGP ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Brain, Testis
896719	171	ATT ...	ILG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
152010	45	ATG ...	MTR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, MEF
553096	222	CTG ...	LGR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	Brain
57070	36	GTG ...	VQR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, Spleen_B_cell, Testis
57724	102	TTG ...	LLF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, Testis
900039	69	ATG ...	MSK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
57907	99	TTG ...	LFF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, Testis
58393	39	CTG ...	LVQ ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Spleen_B_cell, Testis
896433	174	AGG ...	RSA ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14
689	138	GTG ...	VTR ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Skin_tumor, Spleen_B_cell, Testis

Export data