Transcript 2205 | MetamORF

Transcript

ID CARD

MetamORF ID

2205

ENSMUST00000129001

Name

Ankrd13a-202

Strand

Biotype

processed_transcript

Start-end positions

114795743-114806200

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:68420

Aliases

1100001D10Rik,
ANKRD13, Ankrd13a, AU046136,
ENSMUSG00000041870, MGI:1915670, NCBI:68420,
OFF:Ankrd13a

Chr 5

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
184200	36	GTG ...	VEH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
904226	33	ACG ...	TDH ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
902361	93	ATC ...	ITP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
901963	147	ATG ...	MSM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
903509	222	AGG ...	RAG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
517945	132	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Spleen_B_cell
191170	285	CTG ...	LES ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Spleen_B_cell
183482	81	CTG ...	LAE ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
901969	180	ATA ...	IAT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
903526	42	TTG ...	LTS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
519371	48	CTG ...	LLG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
903915	138	ATC ...	ISL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
522641	141	TTG ...	LIS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
522680	39	GTG ...	VPR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
904676	168	ACG ...	THG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
523079	288	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Spleen_B_cell
521999	51	GTG ...	VCH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
180527	57	CTG ...	LKD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Spleen_B_cell
169487	111	GTG ...	VNN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Spleen_B_cell
520233	117	CTG ...	LNP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
520895	45	TTG ...	LPS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
177289	114	CTG ...	LQL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
172980	108	CTG ...	LAM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
517309	126	TTG ...	LKS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
517823	93	ATG ...	MAE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
520448	60	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
173704	57	CTG ...	LES ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Spleen_B_cell
2204	69	TTG ...	LGR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
176180	96	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
901805	57	ATC ...	IHW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
905616	81	ATC ...	IHW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
903729	84	ACG ...	TCT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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