Transcript 22718 | MetamORF

Transcript

ID CARD

MetamORF ID

22718

ENSMUST00000128991

Name

Aldh3a2-204

Strand

Biotype

processed_transcript

Start-end positions

61264170-61267127

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:11671

Aliases

Ahd-3,
Ahd-3r, Ahd3, Ahd3-r,
AI194803, Aldh3a2, Aldh4,
Aldh4-r, ENSMUSG00000010025, FALDH,
MGI:1353452, NCBI:11671, OFF:Aldh3a2

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
889308	228	TTG ...	LAS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
452385	48	TTG ...	LRP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
888012	198	CTG ...	LLT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
645661	213	GTG ...	VSC ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
650372	174	CTG ...	LCS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
889853	246	TTG ...	LGN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
887842	87	GTG ...	VQE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
446173	117	TTG ...	LQQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
890060	99	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
303226	93	ATG ...	MKS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
452613	129	CTG ...	LRF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
890437	132	CTG ...	LTF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
23458	255	TTG ...	LAS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, R1E, Testis
22717	273	TTG ...	LGN ...	Ribo-seq	TTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, R1E, Testis, v6-5
641682	219	GTG ...	VAV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
653820	180	CTG ...	LVL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
294880	114	GTG ...	VNS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
292188	105	ATG ...	MHT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver

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