Transcript 19134 | MetamORF

Transcript

ID CARD

MetamORF ID

19134

ENSMUST00000128960

Name

Brip1os-201

Strand

Biotype

antisense_RNA

Start-end positions

86201370-86211192

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

NCBI:74038

Aliases

4632419I22Rik,
Brip1os, ENSMUSG00000085208, MGI:1921288,
NCBI:74038, OFF:Brip1os

Chr 11

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
310050	48	CTG ...	LSK ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Overlapping sORF	BMDC, Brain, MEF, R1E, v6-5
304729	54	CTG ...	LIL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Overlapping sORF	Brain, Liver, MEF, R1E, v6-5
1596048	261	GTG ...	VRQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Overlapping sORF	MEF
1482970	63	CTG ...	LKV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Overlapping sORF	BMDC, MEF
446831	78	GTG ...	VAG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Overlapping sORF	MEF
294688	123	TTG ...	LAP ...	Ribo-seq	TTG	strong	8	sORFs_org_Mouse	Overlapping sORF	Brain, E14, Liver, MEF, Neutrophil, R1E
644290	63	CTG ...	LRP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Overlapping sORF	MEF
1597633	36	GTG ...	VSP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Overlapping sORF	MEF
305989	30	ATG ...	MDK ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Overlapping sORF	Brain, MEF, R1E, v6-5
450470	36	CTG ...	LQT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Overlapping sORF	BMDC, Liver
1757480	45	TTG ...	LES ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Overlapping sORF	MEF
645169	144	ATG ...	MSA ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Overlapping sORF	BMDC, MEF, Neutrophil
1598081	108	TTG ...	LER ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Overlapping sORF	MEF
1599544	72	GTG ...	VVL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Overlapping sORF	MEF
651869	87	CTG ...	LTS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Overlapping sORF	BMDC, MEF, Neutrophil
19133	36	ATG ...	MGV ...	Ribo-seq	ATG	strong	14	sORFs_org_Mouse	Overlapping sORF	B_cell, BMDC, Brain, C2C12, Liver, MEF, Neutrophil, R1E, Testis, v6-5
452654	96	TTG ...	LYC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Overlapping sORF	MEF
451413	117	TTG ...	LKE ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Overlapping sORF	MEF
304987	42	GTG ...	VAP ...	Ribo-seq	GTG	strong	10	sORFs_org_Mouse	Overlapping sORF	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E
645236	204	CTG ...	LLT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Overlapping sORF	MEF, v6-5
453472	36	TTG ...	LLE ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Overlapping sORF	Liver, MEF
931239	57	GTG ...	VKI ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Overlapping sORF	BMDC, MEF
1600108	144	CTG ...	LEG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Overlapping sORF	MEF
641714	177	GTG ...	VDG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Overlapping sORF	MEF
936538	120	ACG ...	TGL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Overlapping sORF	E14
301353	30	TTG ...	LLP ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	Overlapping sORF	BMDC, Brain, Liver, MEF, NSC, R1E, v6-5
1599001	36	CTG ...	LTF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Overlapping sORF	MEF
1484138	42	CTG ...	LDT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Overlapping sORF	BMDC
1600322	33	CTG ...	LEA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Overlapping sORF	MEF
1338722	33	CTG ...	LVP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Overlapping sORF	E14
298990	36	ATG ...	MEL ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	Overlapping sORF	BMDC, Brain, Liver, MEF, Neutrophil, NSC, R1E, v6-5
641394	36	CTG ...	LSG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Overlapping sORF	MEF
454158	141	CTG ...	LGQ ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Overlapping sORF	MEF
648754	141	GTG ...	VKP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Overlapping sORF	MEF
649871	60	GTG ...	VRL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Overlapping sORF	BMDC, MEF, Neutrophil
307200	66	CTG ...	LHM ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Overlapping sORF	Brain, Liver, MEF, R1E, v6-5
651562	48	GTG ...	VKS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Overlapping sORF	BMDC, MEF, Neutrophil
1397216	30	GTG ...	VPS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Overlapping sORF	Liver
1340136	42	GTG ...	VYR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Overlapping sORF	E14, Liver
1599175	66	CTG ...	LWL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Overlapping sORF	MEF
299287	60	ATG ...	MSL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Overlapping sORF	Brain, Liver, R1E, v6-5

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