Transcript 12600 | MetamORF

Transcript

ID CARD

MetamORF ID

12600

ENSMUST00000128958

Name

Mapk1-204

Strand

Biotype

processed_transcript

Start-end positions

17035338-17038705

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

NCBI:26413

Aliases

9030612K14Rik,
AA407128, AU018647, C78273,
ENSMUSG00000063358, ERK, Erk2,
Mapk1, MAPK2, MGI:1346858,
NCBI:26413, OFF:Mapk1, p41mapk,
p42mapk, Prkm1, PRKM2

Chr 16

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
12631	216	CTG ...	LDK ...	Ribo-seq	CTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
1188797	192	AGG ...	RLW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
33795	81	TTG ...	LDD ...	Ribo-seq	TTG	strong	10	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
33484	60	TTG ...	LNR ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
1185908	66	AAG ...	KEK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
12155	117	TTG ...	LTW ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
34652	57	CTG ...	LLD ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, R1E, v6-5
12693	204	TTG ...	LKL ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
1187224	93	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
34099	66	TTG ...	LKL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1188640	45	ATT ...	IFE ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1046210	150	TTG ...	LTF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, NSC
12599	204	TTG ...	LTF ...	Ribo-seq	TTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
1186078	54	AGG ...	RLW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
12471	66	TTG ...	LKR ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
1187434	60	AAG ...	KLK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1045658	171	CTG ...	LDL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, R1E
12650	147	CTG ...	LEQ ...	Ribo-seq	CTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
1186407	129	AGG ...	RIE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1188660	114	ATT ...	IAE ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1046010	162	CTG ...	LDK ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, R1E
1185462	96	AAG ...	KFD ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
12652	198	TTG ...	LNR ...	Ribo-seq	TTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
12679	162	CTG ...	LAH ...	Ribo-seq	CTG		16	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
1189257	183	AGG ...	RIE ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
12253	135	CTG ...	LKR ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
12223	138	TTG ...	LLK ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
951880	102	ACG ...	TTY ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
12667	225	CTG ...	LDL ...	Ribo-seq	CTG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
976126	78	AAG ...	KNS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14

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