Transcript 8690 | MetamORF

Transcript

ID CARD

MetamORF ID

8690

ENSMUST00000128870

Name

Psmb6-202

Strand

Biotype

retained_intron

Start-end positions

70527072-70527858

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:19175

Aliases

ENSMUSG00000018286,
Lmp19, MGI:104880, Mpnd,
NCBI:19175, OFF:Psmb6, Psmb6

Chr 11

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
451124	93	TTG ...	LAA ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, Neutrophil, R1E, Spleen_B_cell
1446573	66	CTG ...	LSS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E
1529810	141	GTG ...	VLG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
448927	102	GTG ...	VIR ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, Neutrophil, R1E, Spleen_B_cell
304190	36	ATG ...	MAM ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell
301612	57	GTG ...	VLL ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, Neutrophil, R1E, Spleen_B_cell
1528485	138	TTG ...	LGK ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
8689	69	TTG ...	LPS ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, R1E, Skin_tumor, Spleen_B_cell
454364	135	TTG ...	LAM ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, Neutrophil, R1E, Spleen_B_cell
1529066	147	GTG ...	VNV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
447578	96	CTG ...	LAG ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell
447730	30	ATG ...	MLM ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, R1E, Spleen_B_cell
452119	51	TTG ...	LGD ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, Neutrophil, R1E, Spleen_B_cell

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