Transcript 44349 | MetamORF

Transcript

ID CARD

MetamORF ID

44349

ENSMUST00000128765

Name

Phospho2-203

Strand

Biotype

processed_transcript

Start-end positions

69789712-69800005

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:73373

Aliases

1700048E23Rik,
AI661517, AU021728, AV006103,
ENSMUSG00000027088, MGI:1920623, NCBI:73373,
OFF:Phospho2, Phos2, Phospho2

Chr 2

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
48503	258	TTG ...	LGE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
736165	123	GTG ...	VRV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
46739	42	CTG ...	LML ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
49117	45	GTG ...	VLM ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
44348	48	CTG ...	LVL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
50477	165	TTG ...	LTT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
125385	129	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
50334	114	ATG ...	MFH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
734560	138	TTG ...	LEP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
50956	237	GTG ...	VRV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
106274	45	TTG ...	LLH ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
95173	60	ATG ...	MFT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
499311	63	GTG ...	VCE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
46846	78	TTG ...	LFL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
103813	93	GTG ...	VLQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
44616	222	GTG ...	VRY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
48700	39	ATG ...	MLA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
116888	66	GTG ...	VKD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
115887	42	CTG ...	LHI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
49830	180	GTG ...	VKD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
115893	75	CTG ...	LAE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
45902	36	CTG ...	LAA ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	3T3, Testis
733810	42	CTG ...	LGA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
740575	51	TTG ...	LTT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
97764	69	TTG ...	LSY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
117715	132	ATG ...	MLE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
735594	33	GTG ...	VRA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	3T3
51355	189	CTG ...	LAE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Testis
51487	252	TTG ...	LEP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, E14

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