Transcript 186366

Transcript

ID CARD

MetamORF ID

186366

ENSMUST00000128187

Name

Hnrnpdl-202

Strand

Biotype

protein_coding

Start-end positions

100033577-100039222

CDS Start-stop positions

100036125-100039162

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:50926

Aliases

AA407431,
AA959857, D5Ertd650e, D5Wsu145e,
ENSMUSG00000029328, hnRNP DL, hnRNP-DL,
Hnrnpdl, Hnrnpdl1, Hnrpdl,
JKTBP, MGI:1355299, NCBI:50926,
OFF:Hnrnpdl

Chr 5

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1560240	204	CTG ...	LGI ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
1687221	228	GTG ...	VAM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
1686681	51	ATG ...	MKE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
66731	48	TTG ...	LCF ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, R1E, v6-5
1685874	147	GTG ...	VAM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1560161	192	ATG ...	MGT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
62464	69	CTG ...	LPP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
65038	51	CTG ...	LRA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
62513	45	TTG ...	LDL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
66737	54	TTG ...	LDL ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, R1E, v6-5
1661267	111	ATG ...	MGT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1660891	51	CTG ...	LPI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
1687196	222	ATG ...	MAA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
1560032	213	ATG ...	MII ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain, MEF
1661404	132	ATG ...	MII ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1560676	183	ATG ...	MDM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
62304	153	TTG ...	LRN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1686930	249	ATG ...	MVV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
1661334	123	CTG ...	LGI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1687194	255	GTG ...	VPM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
977578	105	ATT ...	ILN ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1687084	270	ATG ...	MEI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
1687050	243	GTG ...	VIR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
1686988	282	ATG ...	MIK ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	Glioma, Liver, MEF, MESC
1660197	189	ATG ...	MEI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1659832	201	ATG ...	MIK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1685817	174	GTG ...	VPM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
188796	30	ATG ...	MTV ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	B_cell, Brain, Glioma, Liver, MEF, MESC, R1E, v6-5
62509	39	TTG ...	LCF ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF, v6-5
1661457	141	ATG ...	MAA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1686912	246	GTG ...	VVI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
63119	102	GTG ...	VRN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, v6-5

Export data