Transcript 414364

Transcript

ID CARD

MetamORF ID

414364

ENSMUST00000127659

Name

Rpl22-203

Strand

Biotype

processed_transcript

Start-end positions

152327126-152330275

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:19934

Aliases

2700038K18Rik,
ENSMUSG00000028936, MGI:99262, NCBI:19934,
OFF:Rpl22, Rpl22

Chr 4

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
900398	270	AAG ...	KQV ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
414363	294	GTG ...	VAK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
1657245	60	CTG ...	LYT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
547513	30	ATG ...	MES ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF
958	36	ATG ...	MGK ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil, NSC
1226402	54	CTG ...	LHS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
1232968	300	AAG ...	KLV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
513153	39	TTG ...	LWR ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
414428	288	AAG ...	KGG ...	Ribo-seq	AAG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12, E14

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