Transcript 147064

Transcript

ID CARD

MetamORF ID

147064

ENSMUST00000127266

Name

Rad23b-202

Strand

Biotype

processed_transcript

Start-end positions

55350050-55368574

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:19359

Aliases

0610007D13Rik,
AV001138, ENSMUSG00000028426, HR23B,
MGI:105128, mHR23B, NCBI:19359,
OFF:Rad23b, p58, Rad23b

Chr 4

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
149371	60	ATG ...	MIL ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, R1E, v6-5
150723	36	TTG ...	LNL ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
152104	30	CTG ...	LKR ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
147747	54	CTG ...	LLS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, R1E, v6-5
1885155	87	GTG ...	VRK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
158103	30	ATG ...	MRK ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, R1E, v6-5
150279	63	GTG ...	VMI ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, R1E, v6-5
154591	33	TTG ...	LMR ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC, R1E, v6-5
59008	96	TTG ...	LKE ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5

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