Transcript 502592

Transcript

ID CARD

MetamORF ID

502592

ENSMUST00000127211

Name

Nmd3-202

Strand

Biotype

retained_intron

Start-end positions

69722090-69731976

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:97112

Aliases

C87860,
ENSMUSG00000027787, MGI:2140103, NCBI:97112,
Nmd3, OFF:Nmd3

Chr 3

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
504503	135	CTG ...	LQQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell, v6-5
504117	81	TTG ...	LWW ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell, v6-5
502807	120	GTG ...	VVD ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, R1E, Spleen_B_cell
135356	54	ATG ...	MQA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
1172395	60	ATG ...	MGT ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
505347	69	ATG ...	MLF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
504670	33	GTG ...	VYF ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Spleen_B_cell
816965	48	CTG ...	LEG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
504391	45	TTG ...	LFG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
504009	60	TTG ...	LSM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
507050	153	GTG ...	VMN ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
819487	36	CTG ...	LSP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
140378	48	GTG ...	VET ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell, v6-5
1221818	63	ATC ...	IMG ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
504785	126	GTG ...	VFV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell, v6-5
503461	72	GTG ...	VEA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	MEF, R1E, Spleen_B_cell
506924	117	GTG ...	VDY ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E, Spleen_B_cell, v6-5
1219418	51	AAG ...	KAV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
53512	42	TTG ...	LKK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1221770	63	AGG ...	REL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
972240	168	CTG ...	LPI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1219416	72	ATT ...	IML ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	E14
503469	66	TTG ...	LFS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Spleen_B_cell
504032	102	GTG ...	VLS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, Spleen_B_cell
1174593	51	GTG ...	VCF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
504543	105	ATG ...	MVL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
54097	159	TTG ...	LCC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell

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