Transcript 494 | MetamORF

Transcript

ID CARD

MetamORF ID

494

ENSMUST00000127008

Name

S100a16-207

Strand

Biotype

processed_transcript

Start-end positions

90537325-90542735

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:67860

Aliases

2300002L21Rik,
AI325039, AI663996, DT1P1A7,
ENSMUSG00000074457, MGI:1915110, NCBI:67860,
OFF:S100a16, S100a16, S100F

Chr 3

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
135445	93	GTG ...	VMR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
496	156	CTG ...	LSV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
413378	126	ATA ...	IQS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	C2C12
139262	63	CTG ...	LCP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
142705	288	TTG ...	LAV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver
129856	105	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
140386	135	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
493	150	GTG ...	VPE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Skin_tumor
131204	102	TTG ...	LSW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, C2C12
1014317	210	GTG ...	VEN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1014349	213	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
413625	231	AGG ...	RRQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
16652	72	CTG ...	LTS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain
137004	90	ATG ...	MRV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
16759	48	ATG ...	MPT ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain
127696	180	CTG ...	LDA ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain
413468	234	CTG ...	LEK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, C2C12
134249	144	GTG ...	VRW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain
1013551	174	CTG ...	LVK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
127340	54	CTG ...	LLY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, C2C12
133597	75	ATG ...	MYP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, C2C12
413355	60	GTG ...	VDS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	C2C12
1223568	246	AGG ...	RRW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
413429	69	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	C2C12

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