Transcript 99603 | MetamORF

Transcript

ID CARD

MetamORF ID

99603

ENSMUST00000126992

Name

Rbm39-204

Strand

Biotype

protein_coding

Start-end positions

156161829-156180142

CDS Start-stop positions

-156179227

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:170791

Aliases

1500012C14Rik,
2310040E03Rik, B330012G18Rik, C79248,
caper, ENSMUSG00000027620, MGI:2157953,
NCBI:170791, OFF:Rbm39, R75070,
Rbm39, Rnpc2

Chr 2

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
500668	282	ATG ...	MVH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	B_cell
46573	78	CTG ...	LFS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	B_cell, Brain
111772	45	GTG ...	VLT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	B_cell
47066	114	TTG ...	LII ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	B_cell, Brain
44997	141	GTG ...	VDP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	MEF
814768	138	TTG ...	LLG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	B_cell, R1E
815644	150	ATG ...	MGF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	B_cell
48785	87	ATG ...	MQG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, Brain
46938	99	CTG ...	LRK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	B_cell, Brain
496375	66	CTG ...	LSQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
44920	171	ATG ...	MRE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	B_cell
50534	228	ATG ...	MRE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver

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