Transcript 96385 | MetamORF

Transcript

ID CARD

MetamORF ID

96385

ENSMUST00000126947

Name

Surf2-203

Strand

Biotype

processed_transcript

Start-end positions

26916381-26920172

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:20931

Aliases

ENSMUSG00000014873,
MGI:98444, NCBI:20931, OFF:Surf2,
Surf-2, Surf2

Chr 2

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1422279	96	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
120478	288	TTG ...	LSD ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
1681600	33	GTG ...	VLS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
96431	48	CTG ...	LRR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
812138	48	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
812426	81	GTG ...	VSE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
809495	99	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
96384	99	CTG ...	LSH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
808847	90	GTG ...	VVA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
104887	45	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1680204	30	TTG ...	LSD ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
113981	39	CTG ...	LMC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
807506	144	CTG ...	LPE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
117136	36	ATG ...	MGI ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF
115815	141	ATG ...	MSC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
125253	249	CTG ...	LFT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
1418257	75	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
110320	30	CTG ...	LQT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
117622	162	ATG ...	MSC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
112108	87	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
118803	192	CTG ...	LTD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, R1E
101531	36	CTG ...	LPN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

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