Transcript 1296 | MetamORF

Transcript

ID CARD

MetamORF ID

1296

ENSMUST00000126786

Name

Trappc3-202

Strand

Biotype

processed_transcript

Start-end positions

126262400-126273475

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:27096

Aliases

1110058K12Rik,
AI835942, AU019197, Bet3,
ENSMUSG00000028847, MGI:1351486, NCBI:27096,
OFF:Trappc3, Trappc3

Chr 4

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
898052	126	AGG ...	RQA ...	Ribo-seq	AGG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
58542	54	ATG ...	MER ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Spleen_B_cell, Testis
414188	36	AGG ...	RRT ...	Ribo-seq	AGG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
900406	264	AGG ...	RQA ...	Ribo-seq	AGG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
513009	72	CTG ...	LRG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
150816	66	CTG ...	LNG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
58025	84	CTG ...	LTY ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Spleen_B_cell, Testis
1229748	36	ATC ...	IGD ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
58842	45	TTG ...	LSP ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Spleen_B_cell, Testis
57634	108	CTG ...	LIE ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Spleen_B_cell, Testis
1554197	42	CTG ...	LIS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1554442	54	ATG ...	MAC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
58213	93	TTG ...	LAR ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Spleen_B_cell, Testis
1684211	39	TTG ...	LCI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
60816	279	GTG ...	VGT ...	Ribo-seq	GTG		18	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
58778	93	CTG ...	LFT ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, Spleen_B_cell, Testis
1295	57	CTG ...	LCK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Skin_tumor, Spleen_B_cell, Testis
900271	246	ACG ...	TES ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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