Transcript 66388 | MetamORF

Transcript

ID CARD

MetamORF ID

66388

ENSMUST00000126639

Name

Ywhag-203

Strand

Biotype

processed_transcript

Start-end positions

135930685-135934616

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:22628

Aliases

14-3-3gamma,
D7Bwg1348e, ENSMUSG00000051391, MGI:108109,
NCBI:22628, OFF:Ywhag, Ywhag

Chr 5

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
66505	120	CTG ...	LVQ ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Neutrophil, R1E, Testis, v6-5
904371	54	AAG ...	KPG ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
559806	120	TTG ...	LRR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	v6-5
415002	231	ACG ...	TSS ...	Ribo-seq	ACG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12, E14, MEF
1234298	177	CTG ...	LVQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
170176	63	CTG ...	LKP ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	E14, Liver, MEF
66771	117	GTG ...	VQK ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Neutrophil, NSC, R1E, Testis
415033	159	ATC ...	ILF ...	Ribo-seq	ATC		3	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12, E14
66387	102	CTG ...	LAE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, C2C12, Testis
66848	135	GTG ...	VDR ...	Ribo-seq	GTG		12	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
66928	144	GTG ...	VKM ...	Ribo-seq	GTG		14	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
517836	60	TTG ...	LLR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
902267	159	CTG ...	LAE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
561128	93	GTG ...	VPP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1238442	36	AGG ...	RRS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14

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