Transcript 557930

Transcript

ID CARD

MetamORF ID

557930

ENSMUST00000126383

Name

Tmem259-204

Strand

Biotype

retained_intron

Start-end positions

79975890-79978940

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:216157

Aliases

AC087114.7gm2,
ENSMUSG00000013858, mFLJ00277, MGI:2177957,
NCBI:216157, OFF:Tmem259, ORF61,
R32184_3, Tmem259

Chr 10

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
73462	159	GTG ...	VAE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
559728	30	CTG ...	LGP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
506858	69	CTG ...	LCG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
579367	66	TTG ...	LSA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
573533	45	CTG ...	LAH ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
597749	75	ATG ...	MPT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
183136	93	ATG ...	MWS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
601004	144	GTG ...	VSP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
620053	48	ATG ...	MMP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
582013	45	ATG ...	MPS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
83016	111	CTG ...	LSA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
74781	120	CTG ...	LSG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
837137	39	CTG ...	LCP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
597609	42	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
70809	96	CTG ...	LER ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
258642	102	ATG ...	MIP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
58720	201	CTG ...	LGA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
191751	114	CTG ...	LSS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
1279632	207	AGG ...	RRC ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
605227	84	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
617783	51	CTG ...	LGL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3

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