Transcript 98518 | MetamORF

Transcript

ID CARD

MetamORF ID

98518

ENSMUST00000126276

Name

Golga2-204

Strand

Biotype

retained_intron

Start-end positions

32297080-32307910

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

NCBI:99412

Aliases

AW555139,
ENSMUSG00000002546, GM130, Golga2,
MGI:2139395, NCBI:99412, OFF:Golga2

Chr 2

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1501874	33	GTG ...	VCR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	NSC
736602	198	CTG ...	LAD ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, Neutrophil
1419638	207	CTG ...	LKE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1418503	213	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1165031	30	TTG ...	LHP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
104949	93	CTG ...	LAV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
730738	33	TTG ...	LPF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
100728	75	CTG ...	LGS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
98517	45	CTG ...	LET ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, Neutrophil
101367	33	TTG ...	LAA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Neutrophil
110314	165	GTG ...	VKL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
732403	111	CTG ...	LRE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
739141	204	GTG ...	VSL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
15476	48	GTG ...	VTA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, MEF
102321	66	GTG ...	VLT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
104901	114	CTG ...	LLR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
109477	78	CTG ...	LDS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
735448	75	TTG ...	LKR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
739782	156	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
740832	159	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Liver
738472	60	ATG ...	MRT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
113914	54	GTG ...	VPT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
1053878	138	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
1418505	270	GTG ...	VAF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
738396	45	ATG ...	MRR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
732294	66	ATG ...	MWT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3

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