Transcript 769281

Transcript

ID CARD

MetamORF ID

769281

ENSMUST00000126134

Name

Taf15-202

Strand

Biotype

processed_transcript

Start-end positions

83473115-83489045

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:70439

Aliases

2610111C21Rik,
68kDa, ENSMUSG00000020680, MGI:1917689,
NCBI:70439, OFF:Taf15, Taf15,
Taf2n, TAFII68

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
452524	111	ATG ...	MVV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
454384	102	ATG ...	MSS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
1529139	66	ATG ...	MDK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
452543	102	ATG ...	MRI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
445763	162	ATG ...	MVS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
1122215	114	CTG ...	LNF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
447411	78	ATG ...	MIP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
454167	78	ATG ...	MAS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
451777	105	ATG ...	MMS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
310717	78	CTG ...	LIL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
450844	60	CTG ...	LEV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
646703	225	ATG ...	MFF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
446119	195	GTG ...	VEE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
452899	126	ATG ...	MIS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
450890	144	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
449760	177	ATG ...	MAS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
304201	96	CTG ...	LAM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
310746	90	ATG ...	MGK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF

Export data