Transcript 93448 | MetamORF

Transcript

ID CARD

MetamORF ID

93448

ENSMUST00000125592

Name

Sppl2a-202

Strand

Biotype

retained_intron

Start-end positions

126914874-126923688

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAT ...

Genome browsers

UCSC

Gene

NCBI:66552

Aliases

2010106G01Rik,
C130089K23Rik, ENSMUSG00000027366, MGI:1913802,
NCBI:66552, OFF:Sppl2a, Sppl2a

Chr 2

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
93447	54	CTG ...	LHS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, MEF
965424	243	GTG ...	VED ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
967499	51	ATT ...	IHR ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
106605	30	TTG ...	LLC ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver
1460738	30	ATG ...	MWT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
95468	51	CTG ...	LLY ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, MEF
1417456	54	TTG ...	LIH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
967379	132	CTG ...	LYF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
730663	75	GTG ...	VIL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
1418483	90	TTG ...	LFF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Liver
99263	75	CTG ...	LYN ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, MEF
1461348	96	CTG ...	LTV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1459334	123	TTG ...	LCC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1461140	42	GTG ...	VFF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1420437	168	ATG ...	MFI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
494055	42	GTG ...	VHL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
965028	54	ATT ...	ISS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
968062	93	ATA ...	IAS ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
95496	48	CTG ...	LYN ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Liver, MEF
494575	174	CTG ...	LCM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Liver, Spleen_B_cell
737227	69	CTG ...	LLG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
1167909	57	GTG ...	VGL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, MEF
1053785	75	CTG ...	LCI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Neutrophil
102255	87	ATG ...	MRD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1461572	54	GTG ...	VWA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
966472	45	ATC ...	IVN ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
964413	48	AAG ...	KTQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1461098	93	CTG ...	LIF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
493944	51	TTG ...	LDF ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, Liver, MEF
1460204	99	GTG ...	VSL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
966315	87	ATT ...	IQS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC

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