Transcript 718576

Transcript

ID CARD

MetamORF ID

718576

ENSMUST00000125516

Name

Sf1-206

Strand

Biotype

protein_coding

Start-end positions

6373621-6376654

CDS Start-stop positions

-6376425

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

NCBI:22668

Aliases

BBP,
ENSMUSG00000024949, MGI:1095403, MZFM,
NCBI:22668, OFF:Sf1, Sf1,
WBP4, Zfp162

Chr 19

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1205227	144	AAG ...	KLL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
403094	75	ATG ...	MVG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	3T3
406125	81	GTG ...	VGM ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	3T3
1158945	66	ATG ...	MEV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	E14
725132	111	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, E14
1157369	54	CTG ...	LVV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	E14
726986	105	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, E14
407293	72	GTG ...	VGI ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF	3T3, E14
488324	90	CTG ...	LWA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
726810	126	CTG ...	LWA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
725293	81	TTG ...	LPW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
1201834	132	AGG ...	RWA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
727341	84	GTG ...	VHQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, E14
1203696	105	ATT ...	ILV ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	sORF	E14
721004	102	CTG ...	LVL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF	3T3, BMDC
726718	138	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, E14
725582	132	CTG ...	LHL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, E14
403811	45	ATG ...	MDH ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	3T3, E14
1203514	174	AGG ...	RWP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
488859	102	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, E14
1159584	75	ATG ...	MAC ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	E14
1202740	66	ATC ...	IPC ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	sORF	E14
720874	96	CTG ...	LHL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, E14
1202440	51	AAG ...	KYA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
406786	78	TTG ...	LDA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, E14
1201458	195	AGG ...	RWS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
719388	75	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, E14
1202124	147	ATT ...	ITQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
1200891	45	CTG ...	LEV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	E14
1202077	108	AAG ...	KLL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
720721	69	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, E14
402628	246	CTG ...	LDE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, E14
1201449	87	ATC ...	IGP ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	sORF	E14

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