Transcript 67537 | MetamORF

Transcript

ID CARD

MetamORF ID

67537

ENSMUST00000125016

Name

Sec61a1-202

Strand

Biotype

retained_intron

Start-end positions

88515384-88518903

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:53421

Aliases

AA408394,
AA410007, ENSMUSG00000030082, MGI:1858417,
NCBI:53421, OFF:Sec61a1, Sec61a,
Sec61a1

Chr 6

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
415540	174	CTG ...	LEV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, C2C12
3049	66	TTG ...	LPS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Testis
906695	144	TTG ...	LPE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
67705	51	TTG ...	LAS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
415516	135	ATT ...	IQK ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Intronic sORF	BMDC, C2C12
836607	168	GTG ...	VAH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Neutrophil
909961	132	ATT ...	ISG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
580696	36	GTG ...	VSL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	B_cell
907876	39	AAG ...	KFC ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
69124	117	CTG ...	LTC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Testis
69807	42	GTG ...	VSS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, MEF, Testis
415153	111	ATT ...	ILC ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	C2C12
70612	90	CTG ...	LFL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, Testis
70695	57	GTG ...	VER ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, C2C12, Testis
415422	165	ATC ...	IKP ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Intronic sORF	BMDC, C2C12

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