Transcript 19742 | MetamORF

Transcript

ID CARD

MetamORF ID

19742

ENSMUST00000124778

Name

Nt5c-203

Strand

Biotype

retained_intron

Start-end positions

115490638-115491851

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:50773

Aliases

Dnt,
Dnt1, ENSMUSG00000020736, MGI:1354954,
NCBI:50773, Nt5c, OFF:Nt5c,
Umph-2, Umph2

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
91165	90	GTG ...	VYE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Neutrophil
643714	39	TTG ...	LDA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Liver, Neutrophil
1038016	135	GTG ...	VER ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
643364	180	CTG ...	LVD ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil
20439	96	GTG ...	VPL ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Neutrophil, Testis
90841	60	TTG ...	LEP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Neutrophil
17568	150	CTG ...	LGP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
22087	162	GTG ...	VEQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Neutrophil
645972	33	CTG ...	LRR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
445626	84	GTG ...	VLC ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, MEF
647077	135	CTG ...	LQG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF, Neutrophil
450309	96	GTG ...	VLA ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, MEF
446389	114	CTG ...	LIS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, BMDC
419385	189	GTG ...	VRV ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, C2C12, E14, Liver, MEF, Neutrophil
19741	90	CTG ...	LEQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, Neutrophil, Testis
991566	54	CTG ...	LGG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
652701	201	GTG ...	VKR ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil
653536	177	GTG ...	VDM ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil
651241	120	TTG ...	LFP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, MEF
452701	108	CTG ...	LAS ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Spleen_B_cell
21478	99	GTG ...	VAS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Neutrophil
649427	30	CTG ...	LGP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
930895	57	ACG ...	TCR ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
641960	183	GTG ...	VLV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF
648178	162	GTG ...	VLA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, Liver, MEF
889453	30	TTG ...	LRE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver

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