Transcript 56830 | MetamORF

Transcript

ID CARD

MetamORF ID

56830

ENSMUST00000124409

Name

Pgd-202

Strand

Biotype

retained_intron

Start-end positions

149155192-149159999

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:110208

Aliases

0610042A05Rik,
AU019875, C78335, ENSMUSG00000028961,
MGI:97553, NCBI:110208, OFF:Pgd,
Pgd

Chr 4

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
897405	162	ATT ...	ILK ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1224761	129	GTG ...	VLG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
900131	162	ACG ...	TAK ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
513662	39	ATG ...	MET ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain
897002	174	ATC ...	ITA ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
823030	192	CTG ...	LLT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC
897309	117	AGG ...	RAL ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
57283	129	CTG ...	LLP ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Liver, Testis
1465442	126	CTG ...	LGR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
896524	84	AAG ...	KWT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
59097	180	GTG ...	VKM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Testis
900147	36	AAG ...	KNG ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
58974	171	GTG ...	VHN ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Testis
896333	156	AAG ...	KSC ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
1466165	111	CTG ...	LGS ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
897177	204	AAG ...	KTE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
57019	207	GTG ...	VGD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Testis
56829	195	CTG ...	LDS ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Liver, Testis
898809	117	ATC ...	IRD ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
823	36	ATG ...	MEQ ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Liver
1059294	201	TTG ...	LKS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1058860	165	CTG ...	LTA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
544517	39	ATG ...	MFW ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC
1059412	54	GTG ...	VDR ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
1120	39	TTG ...	LKN ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Liver
550330	51	GTG ...	VCR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC
898575	156	AAG ...	KYR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
58440	183	CTG ...	LIE ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Liver, Testis
897637	159	ATA ...	IEY ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
59064	126	TTG ...	LPK ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, Liver, Testis

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