Transcript 318950

Transcript

ID CARD

MetamORF ID

318950

ENSMUST00000124385

Name

Cltc-203

Strand

Biotype

protein_coding

Start-end positions

86695317-86703697

CDS Start-stop positions

86695566-

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:67300

Aliases

3110065L21Rik,
CHC, Cltc, ENSMUSG00000047126,
MGI:2388633, NCBI:67300, OFF:Cltc,
R74732

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
932326	90	AAG ...	KNC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
770768	54	CTG ...	LET ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	B_cell, MEF
318949	228	TTG ...	LQV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	Brain, Spleen_B_cell
1037916	48	TTG ...	LLL ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	sORF	MEF, Neutrophil, R1E, v6-5
446893	72	ATG ...	MSS ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	sORF	MEF, NSC, R1E, v6-5
451077	60	GTG ...	VVF ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	sORF	E14, MEF
296585	126	ATG ...	MQC ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	sORF	B_cell, E14, MEF, NSC, v6-5
934225	99	AAG ...	KTQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF	BMDC
890803	45	CTG ...	LLI ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	sORF	MEF, Neutrophil, R1E, v6-5
301410	108	CTG ...	LNL ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	sORF	B_cell, BMDC, E14, MEF, NSC, v6-5
310628	63	TTG ...	LNS ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	sORF	B_cell, E14, MEF, Neutrophil, NSC, R1E, v6-5
934653	72	ACG ...	TNS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF	BMDC
309488	114	ATG ...	MPL ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	sORF	B_cell, BMDC, E14, MEF, NSC, v6-5
931204	96	ATT ...	IQK ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	BMDC
310600	108	TTG ...	LTT ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	sORF	B_cell, E14, MEF, NSC, R1E, v6-5
299004	123	ATG ...	MLM ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	sORF	B_cell, BMDC, E14, MEF, NSC, R1E, v6-5
452223	84	CTG ...	LKS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	MEF, v6-5
305956	117	ATG ...	MTT ...	Ribo-seq	ATG	weak	9	sORFs_org_Mouse	sORF	B_cell, BMDC, E14, MEF, NSC, R1E, v6-5
935614	120	AGG ...	RTQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	BMDC
298012	93	TTG ...	LLS ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	sORF	B_cell, E14, MEF, NSC, R1E, v6-5

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