Transcript 147563

Transcript

ID CARD

MetamORF ID

147563

ENSMUST00000124292

Name

Plod1-204

Strand

Biotype

retained_intron

Start-end positions

147922463-147936742

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

NCBI:18822

Aliases

2410042F05Rik,
AI854890, AV007929, ENSMUSG00000019055,
Lh1, MGI:99907, NCBI:18822,
OFF:Plod1, Plod, Plod1

Chr 4

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
150630	60	GTG ...	VCD ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Liver, R1E
152810	123	CTG ...	LQL ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, R1E, v6-5
549066	60	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
550269	87	ATG ...	MPP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
147923	108	CTG ...	LGN ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, R1E, v6-5
147562	39	ATG ...	MTW ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
152805	93	CTG ...	LAE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, MEF
149271	30	CTG ...	LAS ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
551922	93	TTG ...	LVM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
150759	63	GTG ...	VKL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
156620	51	TTG ...	LAT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
553951	111	CTG ...	LSQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
158559	117	CTG ...	LNY ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Liver, R1E, v6-5
151561	39	GTG ...	VTA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14
156574	33	CTG ...	LDL ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, MEF, v6-5
547406	81	TTG ...	LFP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
1509810	36	ATG ...	MKL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	NSC
147840	57	CTG ...	LDH ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E, v6-5
155514	39	CTG ...	LPN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
1082537	114	CTG ...	LEC ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
152191	54	GTG ...	VGP ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF
554077	78	CTG ...	LWP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
156701	39	GTG ...	VTR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
149524	42	GTG ...	VRM ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, NSC

Export data