Transcript 151029

Transcript

ID CARD

MetamORF ID

151029

ENSMUST00000124254

Name

Yipf1-202

Strand

Biotype

processed_transcript

Start-end positions

107318971-107359823

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:230584

Aliases

C030002N13Rik,
ENSMUSG00000057375, MGI:1915532, NCBI:230584,
OFF:Yipf1, Yipf1

Chr 4

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
151471	48	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
156236	141	CTG ...	LGV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
150123	33	CTG ...	LDI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell
166304	147	GTG ...	VGR ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Neutrophil, R1E, v6-5
510649	123	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
1657796	90	ATG ...	MRS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF
156023	36	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
512127	102	TTG ...	LVF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
161066	45	TTG ...	LLH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
164375	120	CTG ...	LGN ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Neutrophil, R1E, v6-5
166135	123	CTG ...	LLG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, Neutrophil, R1E, v6-5
509814	120	TTG ...	LVM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
514167	192	CTG ...	LWI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
151173	69	TTG ...	LAT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
511488	51	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
151028	33	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
155840	57	GTG ...	VTI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

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