Transcript 96008 | MetamORF

Transcript

ID CARD

MetamORF ID

96008

ENSMUST00000123795

Name

Mapre1-203

Strand

Biotype

processed_transcript

Start-end positions

153741602-153758084

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:13589

Aliases

5530600P05Rik,
AI462499, AI504412, AW260097,
BIM1p, D2Ertd459e, Eb1,
ENSMUSG00000027479, Mapre1, MGI:891995,
NCBI:13589, OFF:Mapre1

Chr 2

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1210657	48	ATC ...	ISA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
967642	36	AAG ...	KQA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	MEF
966470	66	TTG ...	LNL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1210468	60	ATA ...	ISR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1211765	48	AAG ...	KRM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
813104	72	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
44434	36	ATG ...	MCT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell
99514	66	TTG ...	LLI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain
93706	147	GTG ...	VNV ...	Ribo-seq	GTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, C2C12, E14, Liver, MEF
108408	114	GTG ...	VKF ...	Ribo-seq	GTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
46348	66	ATG ...	MNI ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, C2C12, E14
103301	63	TTG ...	LIQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain
115137	123	TTG ...	LKK ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, v6-5
813945	72	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
110519	141	GTG ...	VYS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, Liver
15837	93	CTG ...	LAW ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver
412543	132	ACG ...	TSV ...	Ribo-seq	ACG		2	sORFs_org_Mouse	ncRNA sORF	C2C12, E14

Export data