Transcript 17204 | MetamORF

Transcript

ID CARD

MetamORF ID

17204

ENSMUST00000123775

Name

Sparc-203

Strand

Biotype

retained_intron

Start-end positions

55395386-55399574

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:20692

Aliases

BM-40,
ENSMUSG00000018593, MGI:98373, NCBI:20692,
OFF:Sparc, ON, Sparc

Chr 11

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
17203	45	ATG ...	MRA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
17774	126	CTG ...	LVT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
91918	102	GTG ...	VEL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
91726	153	GTG ...	VKK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
90638	108	CTG ...	LNS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
21281	99	CTG ...	LPG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
7921	189	ATG ...	MRS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
19569	135	TTG ...	LFS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
21580	72	ATG ...	MSW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
8740	33	ATG ...	MGR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
91327	171	CTG ...	LTE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
20725	138	CTG ...	LLF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
20703	78	CTG ...	LSW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
21939	60	TTG ...	LPW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
20493	87	GTG ...	VTG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
8322	195	ATG ...	MRM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Testis
20317	135	TTG ...	LRR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
20507	96	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
18381	123	CTG ...	LEA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
91263	93	TTG ...	LAR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
18687	156	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
8088	171	CTG ...	LET ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
21249	183	CTG ...	LDS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
310924	42	CTG ...	LAQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain

Export data