Transcript 560499

Transcript

ID CARD

MetamORF ID

560499

ENSMUST00000123559

Name

Cops4-204

Strand

Biotype

retained_intron

Start-end positions

100532242-100547780

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:26891

Aliases

AW208976,
Cops4, D5Ertd774e, ENSMUSG00000035297,
MGI:1349414, NCBI:26891, OFF:Cops4,
SGN4

Chr 5

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
560498	123	CTG ...	LPT ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Liver, R1E
565321	66	TTG ...	LIT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
564769	72	TTG ...	LSI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
563361	69	CTG ...	LEK ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E
563443	36	TTG ...	LFP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, R1E
563439	33	ATG ...	MTI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
566066	78	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
560888	78	ATG ...	MRV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
169512	168	CTG ...	LAT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	B_cell
562617	54	TTG ...	LQG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
567980	30	ATG ...	MGL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
565402	60	ATG ...	MGQ ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, R1E

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