Transcript 416807

Transcript

ID CARD

MetamORF ID

416807

ENSMUST00000123177

Name

Tpm4-202

Strand

Biotype

processed_transcript

Start-end positions

72134975-72144709

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:326618

Aliases

2610528G24Rik,
ENSMUSG00000031799, MGI:2449202, NCBI:326618,
OFF:Tpm4, Tpm4, Tpm4.2,
Tpm4.2cy

Chr 8

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1265038	162	AGG ...	RSS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1261356	168	AAG ...	KVI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1261493	162	ATA ...	IEN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
5146	30	ATG ...	MAS ...	Ribo-seq	ATG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, MEF, NSC, v6-5
416806	63	AGG ...	RIA ...	Ribo-seq	AGG		2	sORFs_org_Mouse	ncRNA sORF	C2C12, MEF
978165	99	CTG ...	LLE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF, Neutrophil, R1E
754359	96	CTG ...	LEE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, MEF, Neutrophil, R1E
416922	42	ACG ...	TIE ...	Ribo-seq	ACG		2	sORFs_org_Mouse	ncRNA sORF	C2C12, E14
978189	225	AAG ...	KEM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	MEF
427545	63	CTG ...	LSP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil, NSC
1580453	51	CTG ...	LQN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1578538	261	TTG ...	LSY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
920118	69	ACG ...	TQR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
416834	90	ATC ...	ITD ...	Ribo-seq	ATC		2	sORFs_org_Mouse	ncRNA sORF	C2C12, E14
978220	39	ATT ...	IEL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	MEF
978134	105	ATC ...	IQL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	MEF
427804	66	GTG ...	VAK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Spleen_B_cell
917956	219	ATG ...	MQP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
429428	33	CTG ...	LTK ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, E14, MEF
1327163	84	CTG ...	LDR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF, NSC
431080	90	CTG ...	LAG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
978113	72	ACG ...	TTQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1579417	63	CTG ...	LAT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	MEF
416889	93	AGG ...	RPC ...	Ribo-seq	AGG		2	sORFs_org_Mouse	ncRNA sORF	C2C12, MEF

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