Transcript 108483

Transcript

ID CARD

MetamORF ID

108483

ENSMUST00000120564

Name

Igfbp2-202

Strand

Biotype

protein_coding

Start-end positions

72825322-72852467

CDS Start-stop positions

72849142-72852162

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

NCBI:16008

Aliases

AI255832,
ENSMUSG00000039323, IBP-2, Igfbp-2,
Igfbp2, MGI:96437, mIGFBP-2,
NCBI:16008, OFF:Igfbp2

Chr 1

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
851893	177	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
136289	96	ATG ...	MIG ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, NSC, R1E, v6-5
108482	240	ATG ...	MNS ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5
132857	213	GTG ...	VPN ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, NSC, v6-5
851733	42	GTG ...	VVA ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, NSC
1211885	75	ATC ...	IST ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
40952	36	GTG ...	VTS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, NSC, R1E
388426	60	TTG ...	LPA ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, NSC, R1E
40268	84	ATG ...	MIG ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, NSC, R1E
1299805	165	ATG ...	MFS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF Upstream	E14
1219988	132	AGG ...	RSW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
858388	30	CTG ...	LAG ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver, NSC
1214207	144	AGG ...	RSW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
324942	54	ATG ...	MTT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, NSC, R1E
386704	33	GTG ...	VLA ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver, NSC
1243013	36	ATG ...	MEK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1223342	192	AGG ...	RSP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
146727	261	CTG ...	LCS ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, C2C12, E14, Liver, NSC, R1E, v6-5
1215762	246	AGG ...	RSM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
336035	57	GTG ...	VMT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, NSC, R1E
111533	48	GTG ...	VTS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, Liver, NSC, R1E, v6-5
355286	42	CTG ...	LRE ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF, NSC, R1E

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