Transcript 398457

Transcript

ID CARD

MetamORF ID

398457

ENSMUST00000119991

Name

Stard4-203

Strand

Biotype

protein_coding

Start-end positions

33203405-33213766

CDS Start-stop positions

33203810-33213671

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:170459

Aliases

4632419C16Rik,
9030213J02Rik, ENSMUSG00000024378, MGI:2156764,
NCBI:170459, OFF:Stard4, Stard4

Chr 18

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
485012	57	GTG ...	VGS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil
716282	108	TTG ...	LSV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Neutrophil
13812	93	CTG ...	LRA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
13549	45	CTG ...	LGP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
486146	228	GTG ...	VSV ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
712895	132	CTG ...	LCS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, NSC
394329	30	CTG ...	LSI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	MEF, Neutrophil
13401	57	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
713974	84	GTG ...	VAG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Neutrophil
399109	261	TTG ...	LLC ...	Ribo-seq	TTG		4	sORFs_org_Mouse	CDS sORF	Brain, Neutrophil, R1E, Spleen_B_cell
13828	99	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
398456	39	ATG ...	MLP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
716559	126	GTG ...	VRR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Neutrophil
400357	72	TTG ...	LAG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
713670	138	CTG ...	LVL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, NSC
713965	144	CTG ...	LWL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream sORF	E14, MEF, NSC
713690	138	GTG ...	VLS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream sORF	Neutrophil
713880	135	TTG ...	LSG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Neutrophil
486527	99	CTG ...	LRG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative Downstream sORF	B_cell, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
715484	102	GTG ...	VAI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Neutrophil
714412	72	GTG ...	VFH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream sORF	Neutrophil
13655	33	ATG ...	MFW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
486726	249	TTG ...	LSS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	CDS sORF	E14, Neutrophil, R1E, Spleen_B_cell

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