Transcript 503115

Transcript

ID CARD

MetamORF ID

503115

ENSMUST00000119968

Name

Mrpl24-202

Strand

Biotype

protein_coding

Start-end positions

87919506-87923662

CDS Start-stop positions

87921866-87923346

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:67707

Aliases

2010005E08Rik,
2810470K06Rik, 6720473G22Rik, AA407670,
ENSMUSG00000019710, MGI:1914957, Mrpl24,
NCBI:67707, OFF:Mrpl24

Chr 3

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
52461	141	TTG ...	LTT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
818157	117	GTG ...	VGG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
816759	48	TTG ...	LEL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF
749607	36	GTG ...	VKP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
53109	201	CTG ...	LAK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
138196	132	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
507737	39	CTG ...	LMK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF, Spleen_B_cell
16699	33	TTG ...	LAE ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver
144340	63	TTG ...	LEL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Liver, MEF, R1E, Spleen_B_cell
504144	39	CTG ...	LMK ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, MEF, Spleen_B_cell
135705	111	CTG ...	LRQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
817783	63	GTG ...	VER ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
140464	96	GTG ...	VFE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
751706	51	TTG ...	LRG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
503140	36	ATG ...	MKT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, MEF, Spleen_B_cell
53225	177	CTG ...	LVR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Spleen_B_cell
816689	72	TTG ...	LGS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, MEF
126768	33	ATG ...	MLL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
136922	60	ATG ...	MAP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
752535	63	GTG ...	VRL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
821189	87	TTG ...	LGS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Liver, MEF, R1E
507959	36	ATG ...	MKT ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, MEF, Spleen_B_cell
144434	201	CTG ...	LWT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
894196	72	TTG ...	LLG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	MEF

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