Transcript 11386 | MetamORF

Transcript

ID CARD

MetamORF ID

11386

ENSMUST00000118152

Name

Cbx5-202

Strand

Biotype

protein_coding

Start-end positions

103191544-103239816

CDS Start-stop positions

103199641-103213208

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:12419

Aliases

2610029O15Rik,
C75991, Cbx5, ENSMUSG00000009575,
HP1, Hp1a, Hp1alpha,
MGI:109372, NCBI:12419, OFF:Cbx5

Chr 15

ORFs

39 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
354743	60	ATG ...	MWW ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, MEF
33061	117	CTG ...	LMI ...	Ribo-seq	CTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, v6-5
1184023	63	AAG ...	KAF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1182938	39	ATA ...	ICG ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
471031	33	ATG ...	MIL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC, R1E
1183700	87	ATA ...	ISR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
948016	84	AGG ...	RNR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF Upstream	BMDC
472033	42	GTG ...	VPL ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
473595	168	GTG ...	VAC ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
362532	36	CTG ...	LMI ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
421233	129	AGG ...	RHT ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12, E14
471559	111	GTG ...	VAC ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF Upstream	E14, MEF, Neutrophil, Spleen_B_cell
1184157	174	ATA ...	ISP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
11523	30	CTG ...	LRR ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
365595	54	CTG ...	LRS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, R1E, v6-5
1181052	66	AGG ...	RNM ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
33053	114	ATG ...	MIL ...	Ribo-seq	ATG		12	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
357761	39	ATG ...	MKL ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, v6-5
471393	102	GTG ...	VKT ...	Ribo-seq	GTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, NSC, v6-5
1181506	63	GTG ...	VSD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	E14
1182894	39	AGG ...	RKQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
471765	42	TTG ...	LWC ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, Neutrophil, Spleen_B_cell, v6-5
949959	141	AGG ...	RNR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC
1184059	186	AGG ...	RVK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
11385	60	TTG ...	LRE ...	Ribo-seq	TTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, Skin_tumor, v6-5
362382	33	CTG ...	LTW ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, v6-5
358738	30	GTG ...	VST ...	Ribo-seq	GTG	moderate	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
32846	120	GTG ...	VSD ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
33024	183	GTG ...	VKT ...	Ribo-seq	GTG		10	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, v6-5
472002	45	GTG ...	VVP ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1183143	30	ATA ...	ISV ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
948523	135	ATC ...	INR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	E14
788340	96	GTG ...	VAR ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF, NSC
1181695	93	ATA ...	ISP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
11456	78	ATG ...	MIS ...	Ribo-seq	ATG	moderate	14	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, v6-5
1619582	45	TTG ...	LLL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
357026	72	ATG ...	MRR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, MEF
1181743	48	AGG ...	RCW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1183888	105	AGG ...	RVK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14

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