Transcript 128216

Transcript

ID CARD

MetamORF ID

128216

ENSMUST00000117728

Name

Skil-202

Strand

Biotype

protein_coding

Start-end positions

31095125-31119280

CDS Start-stop positions

31097331-31118613

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:20482

Aliases

ENSMUSG00000027660,
MGI:106203, NCBI:20482, OFF:Skil,
Skil, Skir, sno,
SnoN

Chr 3

ORFs

55 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1173099	42	TTG ...	LVF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
129545	90	CTG ...	LLP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
130743	96	GTG ...	VAL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF
133743	51	GTG ...	VSM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell
538667	60	ATG ...	MFG ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	E14, MEF, v6-5
1376096	198	GTG ...	VTM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
137866	69	ATG ...	MLC ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, E14
819402	90	CTG ...	LSS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5
818327	54	GTG ...	VYF ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, v6-5
747596	123	ATG ...	MSG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
138851	54	CTG ...	LWN ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, v6-5
1375793	42	ATG ...	MFP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
138621	96	CTG ...	LKS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
816695	72	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
751931	39	ATG ...	MVK ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1373800	69	CTG ...	LFA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
818113	63	TTG ...	LFK ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
143375	72	ATG ...	MER ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Spleen_B_cell
818039	102	CTG ...	LIA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1374605	48	GTG ...	VTM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
820314	33	GTG ...	VQL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
818350	57	GTG ...	VMS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
749201	36	GTG ...	VKT ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
139498	45	ATG ...	MLR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
138748	198	ATG ...	MNA ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, v6-5
131730	75	ATG ...	MLY ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1172843	39	GTG ...	VFL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
1224362	192	ATG ...	MFP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
136651	39	TTG ...	LEE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
139670	222	CTG ...	LAV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1646583	150	TTG ...	LRH ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
131720	57	GTG ...	VLW ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
818384	99	TTG ...	LFS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
1173287	33	TTG ...	LAK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
1648806	33	CTG ...	LKI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
17000	51	GTG ...	VTQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell
508569	60	GTG ...	VTQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Spleen_B_cell
537895	33	CTG ...	LSS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
135175	111	GTG ...	VEC ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
131078	210	TTG ...	LKW ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, v6-5
750258	168	TTG ...	LRL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
133209	216	GTG ...	VPL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, v6-5
130781	153	ATG ...	MFS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
140896	66	GTG ...	VPG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
140869	75	CTG ...	LYP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
819255	54	ATG ...	MSC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
818107	75	ATG ...	MLR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
132395	42	CTG ...	LWA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
132126	63	CTG ...	LTR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1222684	192	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	MEF
1218189	129	TTG ...	LGV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	MEF
819892	39	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	MEF
749803	135	ATG ...	MLG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, v6-5
128215	93	ATG ...	MHK ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
816636	141	ATG ...	MYI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	MEF, v6-5

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