Transcript 292593

Transcript

ID CARD

MetamORF ID

292593

ENSMUST00000116376

Name

Sh3bp5l-202

Strand

Biotype

protein_coding

Start-end positions

58330724-58347728

CDS Start-stop positions

58331681-58346397

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:79566

Aliases

2310074E09Rik,
BC003251, ENSMUSG00000013646, MGI:1933124,
mKIAA1720, NCBI:79566, OFF:Sh3bp5l,
Sh3bp5l

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
91052	81	GTG ...	VVR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E, v6-5
640607	48	GTG ...	VTQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1757869	84	CTG ...	LEA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
305545	240	TTG ...	LDL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
20505	120	TTG ...	LEL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E, v6-5
317955	87	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
308913	105	CTG ...	LGS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E, v6-5
296323	111	TTG ...	LPL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E, v6-5
17407	114	CTG ...	LLP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, R1E, v6-5
292592	51	TTG ...	LSW ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	Brain
90792	177	ATG ...	MVL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E, v6-5
299741	75	GTG ...	VKN ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	3T3, v6-5
22099	195	TTG ...	LPP ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E, v6-5
18322	174	GTG ...	VLL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E, v6-5
17780	132	TTG ...	LLL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	Brain, R1E, v6-5
21245	78	GTG ...	VRC ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E, v6-5
297691	60	TTG ...	LHR ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, NSC, R1E, v6-5

Export data