Transcript 7408 | MetamORF

Transcript

ID CARD

MetamORF ID

7408

ENSMUST00000115526

Name

Tspan7-202

Strand

Biotype

protein_coding

Start-end positions

10485158-10596605

CDS Start-stop positions

10485158-10590231

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:21912

Aliases

1200014P11Rik,
A15, AI323365, Cd231,
ENSMUSG00000058254, MGI:1298407, Mxs1,
NCBI:21912, OFF:Tspan7, PE31,
R74651, TALLA, Tm4sf2,
Tspan7

Chr X

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
284056	36	CTG ...	LAF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
278689	39	TTG ...	LLA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
276309	114	TTG ...	LLR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
282330	48	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
281566	93	CTG ...	LLW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
284233	42	TTG ...	LDA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
280931	42	ATG ...	MRG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
278613	42	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
286721	69	ATG ...	MPC ...	Ribo-seq	ATG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC
286185	93	ATG ...	MPC ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
283042	78	ATG ...	MPC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
282244	51	TTG ...	LAS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
286348	57	TTG ...	LLL ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
7407	51	CTG ...	LQS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Skin_tumor
286061	51	CTG ...	LAF ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
284705	51	ATG ...	MAM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
279573	69	TTG ...	LIG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream sORF	Brain
281006	39	TTG ...	LLS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, E14
88860	42	CTG ...	LSR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Downstream sORF	Brain, Testis
280085	87	ATG ...	MCS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
278117	45	ATG ...	MMR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
278104	78	TTG ...	LEP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
281608	69	TTG ...	LIT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
88666	54	CTG ...	LAC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream sORF	Brain, Testis
286344	42	ATG ...	MRG ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
282989	33	TTG ...	LLH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1573572	99	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
279281	66	CTG ...	LEQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
280306	69	ATG ...	MPC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
278187	36	CTG ...	LSV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
275485	33	CTG ...	LTA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
280433	78	GTG ...	VAC ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
278273	96	ATG ...	MLP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14
286117	48	CTG ...	LWP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, NSC
280328	111	CTG ...	LRT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
285425	63	CTG ...	LSL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
286231	54	TTG ...	LLA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
285385	51	ATG ...	MAM ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
276869	45	CTG ...	LGK ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14
281030	90	CTG ...	LWR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
89584	57	CTG ...	LLA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream sORF	Brain, Testis
286885	45	ATG ...	MMR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, NSC
283034	78	TTG ...	LFF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain

Export data