Transcript 13473 | MetamORF

Transcript

ID CARD

MetamORF ID

13473

ENSMUST00000115268

Name

Csf1r-202

Strand

Biotype

protein_coding

Start-end positions

61105852-61132149

CDS Start-stop positions

61105950-61130480

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:12978

Aliases

AI323359,
CD115, CSF-1R, Csf1r,
Csfmr, ENSMUSG00000024621, Fim-2,
Fim2, Fms, M-CSF-R,
M-CSFR, MGI:1339758, NCBI:12978,
OFF:Csf1r

Chr 18

ORFs

72 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
959241	42	ATG ...	MPT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
959730	105	AGG ...	RPA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
959601	39	AGT ...	SPP ...	Ribo-seq	AGT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
397563	84	CTG ...	LHR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, Neutrophil
959206	42	AGG ...	RLC ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
959834	84	ATA ...	ICA ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
959366	60	CTG ...	LSC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
395285	75	ATG ...	MAV ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain
959692	111	AGG ...	RSR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
959573	45	ACG ...	TLS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
959006	99	AGG ...	RSR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
959520	111	AGG ...	RTQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
959832	213	ATA ...	ILL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
959177	33	AGG ...	RAW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
959004	84	ATT ...	IQA ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
959356	45	ATG ...	MWP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
392796	66	ATG ...	MCE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
856915	48	ATG ...	MET ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
399970	261	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
958762	51	ATG ...	MKP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Neutrophil
394078	42	ATG ...	MGW ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
959202	99	CTG ...	LYV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
959509	240	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
959059	63	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
959097	33	TTG ...	LGT ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
399821	96	CTG ...	LVR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Neutrophil
959137	42	AGG ...	RLQ ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
396630	45	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
394537	57	ATG ...	MAP ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain
958584	30	ATG ...	MDG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
957907	57	CTG ...	LAY ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
957959	30	TTG ...	LVW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
959156	288	ATG ...	MLT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
396170	126	GTG ...	VTS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain
13472	33	CTG ...	LED ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Skin_tumor
958684	36	AGG ...	RSR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
958812	30	AGG ...	RPD ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
959044	108	ATT ...	IIK ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
394912	36	GTG ...	VGV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
958100	168	ATA ...	ILL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
398429	48	CTG ...	LMS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
958064	48	ATG ...	MQM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
958614	90	AGG ...	RPA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
959635	156	AGG ...	RTQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
398616	84	GTG ...	VHP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
395481	105	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Neutrophil
399737	36	GTG ...	VGV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
958752	33	GTG ...	VTS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
959063	99	ATG ...	MSP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
392871	165	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
958211	252	GTG ...	VTV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
959069	45	AGG ...	RGP ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
959960	45	ATG ...	MTP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
959325	57	TTG ...	LGR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
959415	57	ACG ...	TQN ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
958744	114	ATA ...	ITI ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
958369	105	CTG ...	LSR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
958414	72	ACG ...	TLS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
399280	210	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
959876	48	AGG ...	RAW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
958655	36	CTG ...	LSS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
398022	63	CTG ...	LNT ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
396765	54	ATG ...	MAL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
398827	90	CTG ...	LRR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
958498	33	AGG ...	RFG ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
398168	78	CTG ...	LSW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
1049168	36	TTG ...	LTA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
393079	84	TTG ...	LTA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
398294	162	CTG ...	LLW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
393799	69	GTG ...	VWN ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Brain
395027	84	CTG ...	LVR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
400240	207	CTG ...	LLW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain

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