Transcript 41011 | MetamORF

Transcript

ID CARD

MetamORF ID

41011

ENSMUST00000114748

Name

Atp5a1-202

Strand

Biotype

protein_coding

Start-end positions

77773956-77782866

CDS Start-stop positions

77777530-77782382

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:11946

Aliases

AI035633,
AL022851, AL023067, Atp5a1,
Atp5f1a, Atpm, D18Ertd206e,
ENSMUSG00000025428, MGI:88115, Mom2,
NCBI:11946, OFF:Atp5a1

Chr 18

ORFs

94 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
392968	87	CTG ...	LTL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver
397744	114	TTG ...	LTQ ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver
40012	63	CTG ...	LVM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, C2C12, Liver
1197183	48	AGG ...	RLW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
13615	81	ATG ...	MGP ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, C2C12, Liver
801556	45	CTG ...	LWI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
396183	93	CTG ...	LPL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver
40259	33	ATG ...	MLF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
1196664	60	AGG ...	RRG ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
801253	33	TTG ...	LVP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
801136	90	TTG ...	LVQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	B_cell
959550	162	AGG ...	RLV ...	Ribo-seq	AGG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1196697	105	AAG ...	KPL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
801315	30	GTG ...	VMV ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver
41174	147	TTG ...	LTN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver
394904	81	CTG ...	LPR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver
393476	99	CTG ...	LEL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver
39832	60	GTG ...	VMC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver
41151	192	TTG ...	LKN ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver, MEF
41126	114	TTG ...	LRM ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver
973246	78	ATA ...	IKA ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
40873	171	TTG ...	LKH ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver, NSC
717865	51	TTG ...	LME ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
395096	72	CTG ...	LVV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
40428	174	TTG ...	LKN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
13621	78	CTG ...	LHL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver
959567	93	ACG ...	TLS ...	Ribo-seq	ACG		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
40665	150	ATG ...	MRV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver
856965	33	CTG ...	LIW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
392816	54	CTG ...	LRL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver
13740	135	CTG ...	LGK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF
40497	57	ATG ...	MCP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver
41073	186	CTG ...	LPY ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, NSC
958959	66	AGG ...	RYH ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1199136	165	AGG ...	RWL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
40804	159	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver
486859	99	TTG ...	LAR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver, MEF
486102	111	ATG ...	MLW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF Upstream	B_cell, Liver
41024	168	ATG ...	MRV ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF
959243	54	AGG ...	RRH ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
398783	48	ATG ...	MER ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver
40614	75	TTG ...	LKH ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver
400089	108	ATG ...	MSP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver, NSC
40227	90	CTG ...	LPY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver
13801	150	TTG ...	LVT ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF, NSC
959642	60	ATA ...	ISG ...	Ribo-seq	ATA		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
41124	153	ATG ...	MCP ...	Ribo-seq	ATG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
487134	57	ATG ...	MLL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, E14, Liver
959633	42	AGG ...	RVQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1199791	150	ATC ...	ILT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
40351	129	TTG ...	LTN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
398580	120	TTG ...	LPL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver
1198507	36	AAG ...	KQR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1200200	183	AGG ...	RWL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
802648	87	GTG ...	VQE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF Upstream	B_cell, Liver, MEF
397812	42	ATG ...	MFK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver
486519	33	TTG ...	LVM ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver
41067	129	ATG ...	MLF ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, Liver, MEF
393256	114	CTG ...	LSL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver
41010	159	CTG ...	LVM ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, C2C12, Liver, MEF, NSC, Testis
39799	81	CTG ...	LRC ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Brain, E14, Liver
40935	156	GTG ...	VMC ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver, MEF, NSC
40794	33	CTG ...	LLT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, Liver
397260	66	GTG ...	VRP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
13630	48	ATG ...	MGK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver
801088	33	TTG ...	LEL ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
40546	144	GTG ...	VYG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, Liver
40903	162	GTG ...	VYG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF
392636	42	CTG ...	LCP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
1197242	30	ATT ...	IWT ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1200022	189	AAG ...	KNR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
715621	48	TTG ...	LPS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Liver
1197521	84	ACG ...	TSG ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
40630	72	CTG ...	LQG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain
487068	72	TTG ...	LTP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver
394875	54	ATG ...	MWV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
394585	57	CTG ...	LCA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, Brain
802683	93	TTG ...	LLV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	B_cell, E14
40966	177	CTG ...	LLS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF
40958	108	ATG ...	MLS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Brain, E14, Liver, MEF
1199559	153	ACG ...	TFQ ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
801766	36	TTG ...	LVR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
487100	78	GTG ...	VWL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver
393960	78	CTG ...	LCG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver
801842	30	TTG ...	LTW ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, E14, Liver
13822	147	GTG ...	VTD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF
397516	63	CTG ...	LPL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
13799	114	CTG ...	LHL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver, MEF
1198762	132	ATC ...	ILT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
486390	36	ATG ...	MLE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, E14, Liver
395749	39	TTG ...	LVL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, Liver
13393	51	CTG ...	LMG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Brain, Liver
958238	171	AAG ...	KNR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
40157	42	CTG ...	LTR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Brain, E14, Liver

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