Transcript 104399

Transcript

ID CARD

MetamORF ID

104399

ENSMUST00000114509

Name

Gls-201

Strand

Biotype

retained_intron

Start-end positions

52185280-52200482

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:14660

Aliases

6330442B14,
AI314027, B230365M23Rik, ENSMUSG00000026103,
Gls, MGI:95752, NCBI:14660,
OFF:Gls

Chr 1

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
375659	42	GTG ...	VAC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
300404	132	TTG ...	LDY ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
155346	36	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
309711	81	CTG ...	LPP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
361917	39	TTG ...	LFL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
349056	36	CTG ...	LNE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
302660	36	CTG ...	LQN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
287658	45	TTG ...	LVF ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
372722	177	GTG ...	VTC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
104398	75	GTG ...	VSP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
309762	63	GTG ...	VMQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
306176	51	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
279110	51	TTG ...	LNK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
327455	30	GTG ...	VLR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
381950	141	TTG ...	LAN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
324189	192	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
266284	156	GTG ...	VMA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
391916	66	TTG ...	LMH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
296503	66	ATG ...	MVV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain

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