Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

7242

ID

ENSMUST00000114372

Name

Hcfc1-202

Strand

-

Biotype

protein_coding

Start-end positions

73942797-73966351

CDS Start-stop positions

73944438-73966003

CDS Relative positions

-

Sequences

Transcript sequence

AGG ...

Gene

ID

NCBI:15161

Aliases

AW060991,
ENSMUSG00000031386, HCF, HCF1,
Hcfc1, MGI:105942, NCBI:15161,
OFF:Hcfc1


Chr X

ORFs

136 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

7241 39

CTG ...

LQA ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Skin_tumor
630383 69

CTG ...

LRD ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
632074 72

TTG ...

LGD ...

Ribo-seq
TTG strong 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
1116782 54

CTG ...

LQL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
631342 51

CTG ...

LTV ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC
766017 84

CTG ...

LGA ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
631276 96

CTG ...

LRV ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
633139 69

CTG ...

LAP ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1119038 39

CTG ...

LKW ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
440713 195

GTG ...

VLS ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell, v6-5
280559 108

CTG ...

LES ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
633315 87

CTG ...

LEL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
441314 144

CTG ...

LET ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
631989 126

CTG ...

LPH ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
442643 51

GTG ...

VPV ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell, v6-5
765854 165

CTG ...

LPQ ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
1526963 48

CTG ...

LAP ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, NSC
276697 111

TTG ...

LLE ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell, v6-5
1118308 45

TTG ...

LCV ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
442228 204

ATG ...

MRA ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell, v6-5
634628 51

CTG ...

LPV ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
278703 39

ATG ...

MEN ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF, Neutrophil,
v6-5
633277 60

CTG ...

LLK ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
630101 48

CTG ...

LSP ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1590491 36

CTG ...

LQA ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
440595 126

CTG ...

LVG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
634786 45

GTG ...

VFE ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
629550 72

GTG ...

VAI ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
1119886 36

CTG ...

LKW ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1120016 120

GTG ...

VAG ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
766688 66

ATG ...

MEE ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14
275856 36

ATG ...

MAA ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
R1E
442652 84

TTG ...

LWL ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Spleen_B_cell,
v6-5
629965 114

ATG ...

MEV ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
280903 36

ATG ...

MAA ...

Ribo-seq
ATG strong 5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Brain, MEF, NSC,
R1E, Spleen_B_cell
7511 36

CTG ...

LQA ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Skin_tumor
629607 51

CTG ...

LPV ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
1592270 33

CTG ...

LQG ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
441476 249

GTG ...

VRP ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
629593 42

CTG ...

LSP ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
632451 69

CTG ...

LRL ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC
1591088 45

ATG ...

MTY ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1117500 33

TTG ...

LMW ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
442935 45

GTG ...

VLS ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell, v6-5
632762 144

TTG ...

LQP ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1592032 36

CTG ...

LLQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF
1118541 123

ATG ...

MYL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
631249 78

CTG ...

LPL ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
633509 33

CTG ...

LKK ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1118379 45

GTG ...

VLC ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    sORF
    Upstream
v6-5
1118677 39

GTG ...

VMV ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
284003 39

CTG ...

LTQ ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Spleen_B_cell
1119882 123

CTG ...

LAQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
633572 108

GTG ...

VQA ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
632157 39

ATG ...

MRA ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
632193 30

GTG ...

VCL ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
444530 147

CTG ...

LES ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Spleen_B_cell
442507 42

GTG ...

VSQ ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
631612 99

CTG ...

LCR ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
629368 216

GTG ...

VSV ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
1078085 42

CTG ...

LQP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Neutrophil
1118679 108

CTG ...

LGN ...

Ribo-seq
CTG strong 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
R1E, v6-5
441948 54

TTG ...

LRD ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Spleen_B_cell
634936 81

TTG ...

LWA ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
628724 279

CTG ...

LSP ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1077969 111

CTG ...

LHP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Neutrophil
1119753 45

GTG ...

VFE ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
631495 105

ATG ...

MTF ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1120761 123

TTG ...

LVA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1278092 39

ATG ...

MTH ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
633547 114

CTG ...

LVP ...

Ribo-seq
CTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
633028 225

ATG ...

MWS ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
441041 102

GTG ...

VTK ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, Spleen_B_cell
632743 129

GTG ...

VKP ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
1593700 36

GTG ...

VRT ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
628838 195

GTG ...

VRP ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
631155 111

CTG ...

LYM ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1592572 45

CTG ...

LWS ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
442346 108

CTG ...

LPV ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, Spleen_B_cell
1116711 114

GTG ...

VAG ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
765706 72

TTG ...

LGM ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
629493 87

CTG ...

LLW ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
628692 39

TTG ...

LFV ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
1335169 48

GTG ...

VPF ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
633475 129

ATG ...

MAA ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
629434 45

CTG ...

LLS ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
1119275 60

GTG ...

VQP ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1119691 33

TTG ...

LYP ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
275569 123

TTG ...

LKH ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain
1334171 63

GTG ...

VLP ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
629929 129

GTG ...

VGL ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E
1118817 36

ATG ...

MVL ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1120296 129

ATG ...

MYL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
629262 138

CTG ...

LGS ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
629049 78

CTG ...

LPV ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
628619 81

CTG ...

LCL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
631541 78

GTG ...

VSC ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
634564 99

TTG ...

LDI ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Neutrophil
440627 111

CTG ...

LCT ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
629235 156

ATG ...

MRR ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
765210 42

CTG ...

LML ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
632667 96

CTG ...

LYP ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1593468 42

GTG ...

VAS ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF
442175 72

GTG ...

VTA ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, Spleen_B_cell
767382 111

CTG ...

LKK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
443304 240

ATG ...

MRR ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
443545 69

ATG ...

MLQ ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Spleen_B_cell
634669 114

GTG ...

VRS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1118252 51

ATG ...

MAL ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
634651 93

ATG ...

MSK ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
631274 186

ATG ...

MRR ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
634890 51

CTG ...

LQL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
631950 54

CTG ...

LRS ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
633561 42

CTG ...

LVL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
441000 87

GTG ...

VPN ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, R1E,
Spleen_B_cell
442000 33

GTG ...

VTD ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Spleen_B_cell
629851 120

ATG ...

MKQ ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, MEF
633445 36

ATG ...

MTQ ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
286217 63

ATG ...

MEN ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF, Neutrophil,
Spleen_B_cell, v6-5
1117394 30

ATG ...

MLP ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
440952 30

TTG ...

LLL ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
1077827 42

ATG ...

MIV ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil
632566 45

CTG ...

LKA ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1077902 105

TTG ...

LSW ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Neutrophil, v6-5
765019 39

ATG ...

MLL ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF
281930 48

CTG ...

LGS ...

Ribo-seq
CTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain
1592810 48

CTG ...

LLW ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
633598 99

ATG ...

MRQ ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
633550 165

GTG ...

VRL ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
629883 129

CTG ...

LSP ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
1117678 36

CTG ...

LAP ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1077972 57

TTG ...

LGV ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, Neutrophil
635124 123

ATG ...

MGL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
280760 108

GTG ...

VRL ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell
1120195 147

GTG ...

VFL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
632118 90

GTG ...

VDN ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5