Transcript 524981

Transcript

ID CARD

MetamORF ID

524981

ENSMUST00000114071

Name

Capg-202

Strand

Biotype

protein_coding

Start-end positions

72549273-72562983

CDS Start-stop positions

72555286-72562875

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

NCBI:12332

Aliases

Capg,
ENSMUSG00000056737, gCap39, mbh1,
MGI:1098259, NCBI:12332, OFF:Capg

Chr 6

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
527849	132	ATG ...	MAC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
530224	150	ATG ...	MAC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
529852	99	CTG ...	LQT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Spleen_B_cell
910059	99	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1470050	33	CTG ...	LTP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
528272	63	CTG ...	LCS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
525658	39	ATG ...	MAQ ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
527053	108	TTG ...	LSA ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell
524980	126	GTG ...	VES ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell
526169	108	ATG ...	MSR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
528086	93	GTG ...	VQC ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
527220	129	GTG ...	VVE ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Spleen_B_cell
526190	81	CTG ...	LCI ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Spleen_B_cell
527319	138	TTG ...	LPG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Spleen_B_cell
582447	42	CTG ...	LTR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC
529974	63	CTG ...	LLC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
586728	63	CTG ...	LTR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, MEF

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