Transcript 454789

Transcript

ID CARD

MetamORF ID

454789

ENSMUST00000113515

Name

Wdfy1-207

Strand

Biotype

protein_coding

Start-end positions

79702262-79761769

CDS Start-stop positions

79705511-79761700

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:69368

Aliases

1700013B03Rik,
1700120F24Rik, ENSMUSG00000073643, FENS-1,
Jr1, MGI:1916618, mKIAA1435,
NCBI:69368, OFF:Wdfy1, WDF1,
Wdfy1, ZFYVE17

Chr 1

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1192443	237	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
152177	69	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
1213243	246	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1288781	60	ATG ...	MAE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
486586	162	ATG ...	MGR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
695675	45	GTG ...	VAL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
454788	165	CTG ...	LMG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell
733014	255	ATG ...	MKV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
740755	114	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
747251	51	TTG ...	LQC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
733872	57	GTG ...	VAL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1626753	42	CTG ...	LWD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
708841	39	TTG ...	LQC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
384560	33	CTG ...	LAQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
129589	48	GTG ...	VIP ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF, Spleen_B_cell
369421	78	GTG ...	VLP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
649573	48	ATG ...	MVA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
546101	60	ATG ...	MVA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
654750	45	CTG ...	LLG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
457123	57	CTG ...	LEY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Spleen_B_cell
1181323	60	CTG ...	LWW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
717209	39	GTG ...	VGH ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
565593	33	GTG ...	VVR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14
1260844	51	AAG ...	KEN ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1217915	123	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14

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